Argitalpenak

Pérez-Bueno, F., Li, H.B., Nasr, S., Caballero-Gaudes, C., & Iglesias, J.E. (2025). TV-Based Deep 3D Self Super-Resolution for FMRI. Proceedings International Symposium on Biomedical Imaging. Doi:10.1109/ISBI60581.2025.10980709

Castro-Macías, F.M., Pérez-Bueno, F., Vega, M., Mateos, J., Molina, R., & Katsaggelos, A.K. (2024). Bayesian Blind Image Deconvolution using an Hyperbolic-Secant prior. Proceedings International Conference on Image Processing Icip, 1500-1506. Doi:10.1109/ICIP51287.2024.10647808

Blanco, B., Molnar, M., Carreiras, M., Collins-Jones, L.H., Vidal, E., Cooper, R.J., & Caballero-Gaudes, C. (2021). Group-level cortical functional connectivity patterns using fNIRS: assessing the effect of bilingualism in young infants. Neurophotonics, 8(2). Doi:10.1117/1.NPh.8.2.025011

Heunis, S., Breeuwer, M., Caballero-Gaudes, C., Hellrung, L., Huijbers, W., Jansen, J.F., Lamerichs, R., Zinger, S., & Aldenkamp, A.P. (2021). The effects of multi-echo fMRI combination and rapid T2*-mapping on offline and real-time BOLD sensitivity. Neuroimage, 238. Doi:10.1016/j.neuroimage.2021.118244

Urunuela, E., Moia, S., & Caballero-Gaudes, C. (2021). A low rank and sparse paradigm free mapping algorithm for deconvolution of FMRI data. Proceedings International Symposium on Biomedical Imaging, 2021-April, 1726-1729. Doi:10.1109/ISBI48211.2021.9433821

Bolton, T.A.W., Kebets, V., Glerean, E., Zöller, D., Li, J., Yeo, B.T.T., Caballero-Gaudes, C., & Van De Ville, D. (2020). Agito ergo sum: Correlates of spatio-temporal motion characteristics during fMRI. Neuroimage, 209. Doi:10.1016/j.neuroimage.2019.116433

Bolton, T.A.W., Urunuela, E., Tian, Y., Zalesky, A., Caballero-Gaudes, C., & Van De Ville, D. (2020). Sparse coupled logistic regression to estimate co-activation and modulatory influences of brain regions. Journal of Neural Engineering, 17(6). Doi:10.1088/1741-2552/aba55e

Correia, J.M., Caballero-Gaudes, C., Guediche, S., & Carreiras, M. (2020). Phonatory and articulatory representations of speech production in cortical and subcortical fMRI responses. Scientific Reports, 10(1). Doi:10.1038/s41598-020-61435-y

Heunis, S., Lamerichs, R., Zinger, S., Caballero-Gaudes, C., Jansen, J.F.A., Aldenkamp, B., & Breeuwer, M. (2020). Quality and denoising in real-time functional magnetic resonance imaging neurofeedback: A methods review. Human Brain Mapping, 41(12), 3439-3467. Doi:10.1002/hbm.25010

Lee, C.W., Blanco, B., Dempsey, L., Chalia, M., Hebden, J.C., Caballero-Gaudes, C., Austin, T., & Cooper, R.J. (2020). Sleep State Modulates Resting-State Functional Connectivity in Neonates. Frontiers in Neuroscience, 14. Doi:10.3389/fnins.2020.00347

Moia, S., Stickland, R.C., Ayyagari, A., Termenon, M., Caballero-Gaudes, C., & Bright, M.G. (2020). Voxelwise optimization of hemodynamic lags to improve regional CVR estimates in breath-hold fMRI. Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society EMBS, 2020-July, 1489-1492. Doi:10.1109/EMBC44109.2020.9176225

Urunuela, E., Jones, S., Crawford, A., Shin, W., Oh, S., Lowe, M., & Caballero-Gaudes, C. (2020). Stability-Based Sparse Paradigm Free Mapping Algorithm for Deconvolution of Functional MRI Data. Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society EMBS, 2020-July, 1092-1095. Doi:10.1109/EMBC44109.2020.9176137

Bastarrika-Iriarte, A., & Caballero-Gaudes, C. (2019). Closing eyes during auditory memory retrieval modulates alpha rhythm but does not alter tau rhythm. Neuroimage, 197, 60-68. Doi:10.1016/j.neuroimage.2019.04.053

Caballero-Gaudes, C., Moia, S., Panwar, P., Bandettini, P.A., & Gonzalez-Castillo, J. (2019). A deconvolution algorithm for multi-echo functional MRI: Multi-echo Sparse Paradigm Free Mapping. Neuroimage, 202. Doi:10.1016/j.neuroimage.2019.116081

Gonzalez-Castillo, J., Caballero-Gaudes, C., Topolski, N., Handwerker, D.A., Pereira, F., & Bandettini, P.A. (2019). Imaging the spontaneous flow of thought: Distinct periods of cognition contribute to dynamic functional connectivity during rest. Neuroimage, 202. Doi:10.1016/j.neuroimage.2019.116129

Blanco, B., Molnar, M., & Caballero-Gaudes, C. (2018). Effect of prewhitening in resting-state functional near-infrared spectroscopy data. Neurophotonics, 5(4). Doi:10.1117/1.NPh.5.4.040401

Caballero-Gaudes, C., Moia, S., Bandettini, P.A., & Gonzalez-Castillo, J. (2018). Quantitative deconvolution of fmri data with multi-echo sparse paradigm free mapping. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, 11072 LNCS, 311-319. Doi:10.1007/978-3-030-00931-1_36

Gaudes, C.C., Bandettini, P.A., & Gonzalez-Castillo, J. (2018). A temporal deconvolution algorithm for multiecho functional MRI. Proceedings International Symposium on Biomedical Imaging, 2018-April, 608-611. Doi:10.1109/ISBI.2018.8363649

Iglesias, J.E., Insausti, R., Lerma-Usabiaga, G., Bocchetta, M., Van Leemput, K., Greve, D.N., van der Kouwe, A., Fischl, B., Caballero-Gaudes, C., & Paz-Alonso, P.M. (2018). A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. Neuroimage, 183, 314-326. Doi:10.1016/j.neuroimage.2018.08.012

Paz-Alonso, P.M., Oliver, M., Lerma-Usabiaga, G., Caballero-Gaudes, C., Quiñones, I., Suárez-Coalla, P., Duñabeitia, J.A., Cuetos, F., & Carreiras, M. (2018). Neural correlates of phonological, orthographic and semantic reading processing in dyslexia. Neuroimage Clinical, 20, 433-447. Doi:10.1016/j.nicl.2018.08.018

Rosenthal, C.R., Mallik, I., Caballero-Gaudes, C., Sereno, M.I., & Soto, D. (2018). Learning of goal-relevant and -irrelevant complex visual sequences in human V1. Neuroimage, 179, 215-224. Doi:10.1016/j.neuroimage.2018.06.023

Vuckovic, A., Gallardo, V.J.F., Jarjees, M., Fraser, M., & Purcell, M. (2018). Prediction of central neuropathic pain in spinal cord injury based on EEG classifier. Clinical Neurophysiology, 129(8), 1605-1617. Doi:10.1016/j.clinph.2018.04.750

Caballero-Gaudes, C., & Reynolds, R.C. (2017). Methods for cleaning the BOLD fMRI signal. Neuroimage, 154, 128-149. Doi:10.1016/j.neuroimage.2016.12.018

Keilholz, S., Caballero-Gaudes, C., Bandettini, P., Deco, G., & Calhoun, V. (2017). Time-Resolved Resting-State Functional Magnetic Resonance Imaging Analysis: Current Status, Challenges, and New Directions. Brain Connectivity, 7(8), 465-481. Doi:10.1089/brain.2017.0543

Tan, F.M., Caballero-Gaudes, C., Mullinger, K.J., Cho, S.Y., Zhang, Y., Dryden, I.L., Francis, S.T., & Gowland, P.A. (2017). Decoding fMRI events in sensorimotor motor network using sparse paradigm free mapping and activation likelihood estimates. Human Brain Mapping, 38(11), 5778-5794. Doi:10.1002/hbm.23767

Gonzalez-Castillo, J., Panwar, P., Buchanan, L.C., Caballero-Gaudes, C., Handwerker, D.A., Jangraw, D.C., Zachariou, V., Inati, S., Roopchansingh, V., Derbyshire, J.A., & Bandettini, P.A. (2016). Evaluation of multi-echo ICA denoising for task based fMRI studies: Block designs, rapid event-related designs, and cardiac-gated fMRI. Neuroimage, 141, 452-468. Doi:10.1016/j.neuroimage.2016.07.049

Iglesias, J.E., Paz-Alonso, P., Lerma-Usabiaga, G., Insausti, R., Miller, K., & Caballero-Gaudes, C. (2016). Simultaneous Bayesian correction of slab boundary artifacts and bias field for high resolution ex vivo MRI. Proceedings International Symposium on Biomedical Imaging, 2016-June, 1384-1387. Doi:10.1109/ISBI.2016.7493525

Allan, T.W., Francis, S.T., Caballero-Gaudes, C., Morris, P.G., Liddle, E.B., Liddle, P.F., Brookes, M.J., & Gowland, P.A. (2015). Functional connectivity in MRI is driven by spontaneous BOLD events. Plos One, 10(4). Doi:10.1371/journal.pone.0124577

Caballero-Gaudes, C., Van de Ville, D., Grouiller, F., Thornton, R., Lemieux, L., Seeck, M., Lazeyras, F., & Vulliemoz, S. (2013). Mapping interictal epileptic discharges using mutual information between concurrent EEG and fMRI. Neuroimage, 68, 248-262. Doi:10.1016/j.neuroimage.2012.12.011

Karahanoǧlu, F.I., Caballero-Gaudes, C., Lazeyras, F., & Van De Ville, D. (2013). Total activation: FMRI deconvolution through spatio-temporal regularization. Neuroimage, 73, 121-134. Doi:10.1016/j.neuroimage.2013.01.067

Karahanoglu, F.I., Grouiller, F., Gaudes, C.C., Seeck, M., Vulliemoz, S., & Van De Ville, D. (2013). Spatial mapping of interictal epileptic discharges in fMRI with total activation. Proceedings International Symposium on Biomedical Imaging, 1500-1503. Doi:10.1109/ISBI.2013.6556819

Gaudes, C.C., Karahanoǧlu, F.I., Lazeyras, F., & Van De Ville, D. (2012). Structured sparse deconvolution for paradigm free mapping of functional MRI data. Proceedings International Symposium on Biomedical Imaging, 322-325. Doi:10.1109/ISBI.2012.6235549